U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX14148868: GSM5896556: pbmc control [C3]; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 256.4M spots, 33.8G bases, 18.4Gb downloads

External Id: GSM5896556_r1
Submitted by: Institut Imagine
Study: NBEAL2 deficiency in humans leads to low CTLA-4 expression in activated conventional T cells
show Abstracthide Abstract
Loss of NBEAL2 function leads to grey platelet syndrome (GPS), a bleeding disorder characterized by macro-thrombocytopenia and a-granule-deficient platelets. A proportion of patients with GPS develop autoimmunity through an unknown mechanism, which might be related to the proteins NBEAL2 interacts with, specifically in immune cells. Here we show a comprehensive interactome of NBEAL2 in primary T cells, based on mass spectrometry ? identification of altogether 74 protein association partners. These include LRBA, a member of the same BEACH domain family as NBEAL2, recessive mutations of which cause autoimmunity and lymphocytic infiltration through defective CTLA-4 trafficking. Investigating the potential association between NBEAL2 and CTLA-4 signalling that is suggested by the mass spectrometry results, we confirm by co-immunoprecipitation that CTLA-4 and NBEAL2 interact with each-other. Interestingly, NBEAL2 deficiency leads to low CTLA-4 expression in patient-derived effector T cells, while their regulatory T cells appear unaffected. Knocking- down NBEAL2 in healthy primary T cells recapitulates the low CTLA-4 expression observed in T cells of GPS patients. Our results thus show that NBEAL2 is involved in the regulation of CTLA-4 expression in conventional T cells and provide a rationale for considering CTLA-4- immunoglobulin therapy in patients with GPS and autoimmune disease. Overall design: scRNAseq on PBMC from 7 healthy donors, 5 patients with mutations in LRBA, 5 patients with mutations in NBEAL2
Sample: pbmc control [C3]
SAMN25870900 • SRS11974373 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM5896556
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: The scRNA-seq libraries were generated using 10X Chromium Single Cell 3′ Library & Gel Bead Kit (v.2 for batch 4, v.3 for batch 1 and 2 and v.3.1. for batch 3) according to the manufacturer's protocol. Cells were counted, diluted at 1000 cells/µL in PBS+0,04% and 20 000 cells were loaded in the 10x Chromium Controller to generate single-cell gel-beads in emulsion. After reverse transcription, gel-beads in emulsion were disrupted. Barcoded complementary DNA was isolated and amplified by PCR. Following fragmentation, end repair and A-tailing, sample indexes were added during index PCR. The purified libraries were sequenced on a Novaseq (Illumina) with 26 cycles of read 1, 8 cycles of i7 index and 98 cycles of read 2 (for kit v.2.) or with 28 cycles of read 1, 8 cycles of i7 index and 91 cycles of read 2 (for kit v.3 and v.3.1).
Runs: 1 run, 256.4M spots, 33.8G bases, 18.4Gb
Run# of Spots# of BasesSizePublished
SRR17993234256,357,42833.8G18.4Gb2023-05-12

ID:
19945286

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...